alevin-fry-tutorials

alevin-fry

• Developing a custom simpleaf workflow from scratch
• Executing single-cell data processing workflows with simpleaf
• Generating a scRNA-seq count matrix with simpleaf
• Analysing split-seq data using salmon and alevin-fry pipeline
• How to run many different sc-RNA-seq protocols using salmon alevin's custom geometry
• Analysing sci-RNA-seq3 data using salmon and alevin-fry pipeline
• A quick start guide to a portable and simplified alevin-fry pipeline
• Spatial single-cell quantification with alevin-fry
• Processing feature barcoding data with alevin-fry
• An introduction to RNA-velocity using alevin-fry
• Resolving the splicing origins of UMIs to improve the specificity of single-cell RNA-seq transcriptome mapping with alevin-fry
• Processing data quickly and in small memory with alevin-fry