Installation

oarfish can be installed in a variety of ways.

Precompiled binaries

Binaries are available via GitHub Releases. You can quickly install the latest release using the following helper script:

curl --proto '=https' --tlsv1.2 -LsSf https://github.com/COMBINE-lab/oarfish/releases/latest/download/oarfish-installer.sh | sh

cargo

If you have cargo installed, you can install oarfish directly from the source code:

cargo install oarfish

You can find the crate on crates.io.

Bioconda

oarfish is available via Bioconda:

conda install -c bioconda oarfish

Next, see the usage examples.