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Changelog

All notable changes to this project will be documented in this file.

The format is based on Keep a Changelog, and this project adheres to Semantic Versioning.

[0.2.6] 2025-06-29

Added

  • Updated QCatch documentation and included an interactive demo page
  • Add tutorial scripts in the README.
  • Transitioned to uv for building and package management and relaxed dependencies for compatibility.

[0.2.5] 2025-05-19

Added

  • Adopted Cookiecutter-style structure based on the Scanpy project template.
  • Added a new flag to export summary metrics as a CSV file.
  • The HTML report now also includes a warning for low mapping rate.
  • Added unit tests and scripts to download test data
  • Updated the EmptyDrops step by removing the limitation on the number of candidate barcodes and making the FDR threshold dynamically adjustable based on the chemistry version.
  • Added source code snippets to the help text section of clustering plots

Changed

  • Switched to more concise progress logging during the cell-calling step.